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Update copyright notice

Peter Colberg 1 year ago
parent
commit
6e0aa96a62
100 changed files with 99 additions and 42 deletions
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      LICENSE
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      Makefile
  3. 1
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      doc/CHANGES.html
  4. 1
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      doc/INSTALL.html
  5. 1
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      doc/README.html
  6. 1
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      doc/contents.mdwn
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      doc/index.html
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      doc/pandoc.css
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      examples/collective_dimer/equilibration/collective_dimer.lua
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      examples/collective_dimer/production/msdd.lua
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      examples/collective_dimer/production/orient.lua
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      examples/collective_dimer/production/vafd.lua
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      examples/confined_dimer/equilibration/confined_dimer.lua
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      examples/confined_dimer/production/cluster.lua
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      examples/confined_dimer/production/confined_dimer.lua
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      examples/confined_dimer/production/msdd.lua
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      examples/confined_dimer/production/orient.lua
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      examples/confined_dimer/production/vafd.lua
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      examples/confined_dimer/tools/cluster.py
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      examples/confined_dimer/tools/cluster_size.py
  24. 1
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      examples/confined_dimer/tools/cluster_trajectory.py
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      examples/confined_dimer/tools/dimer_mean_square_displacement.py
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      examples/confined_dimer/tools/dimer_orientation_autocorrelation.py
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      examples/confined_dimer/tools/dimer_trajectory.py
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      examples/confined_dimer/tools/dimer_velocity_autocorrelation.py
  29. 1
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      examples/driven_dimer/equilibration/driven_dimer.lua
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      examples/driven_dimer/production/cluster.lua
  31. 1
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      examples/driven_dimer/production/driven_dimer.lua
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      examples/driven_dimer/production/msdd.lua
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      examples/driven_dimer/production/orient.lua
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      examples/driven_dimer/production/vafd.lua
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      examples/many_dimer/benchmark/many_dimer.lua
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      examples/many_dimer/equilibration/many_dimer.lua
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      examples/many_dimer/production/many_dimer.lua
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      examples/many_dimer/production/msdd.lua
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      examples/many_dimer/production/orient.lua
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      examples/many_dimer/production/vafd.lua
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      examples/single_dimer/equilibration/single_dimer.lua
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      examples/single_dimer/production/cylindf.cl
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      examples/single_dimer/production/cylindf.lua
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      examples/single_dimer/production/cylinvf.cl
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      examples/single_dimer/production/cylinvf.lua
  46. 1
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      examples/single_dimer/production/msdd.lua
  47. 1
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      examples/single_dimer/production/orient.lua
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      examples/single_dimer/production/polardf.cl
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      examples/single_dimer/production/polardf.lua
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      examples/single_dimer/production/rdf.cl
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      examples/single_dimer/production/rdf.lua
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      examples/single_dimer/production/single_dimer.lua
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      examples/single_dimer/production/vafd.lua
  54. 1
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      examples/single_dimer/tools/cylindrical_density.py
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      examples/single_dimer/tools/cylindrical_velocity.py
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      examples/single_dimer/tools/dimer_force.py
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      examples/single_dimer/tools/dimer_force_distribution.py
  58. 1
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      examples/single_dimer/tools/dimer_mean_square_displacement.py
  59. 1
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      examples/single_dimer/tools/dimer_orientation_autocorrelation.py
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      examples/single_dimer/tools/dimer_trajectory.py
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      examples/single_dimer/tools/dimer_velocity.py
  62. 1
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      examples/single_dimer/tools/dimer_velocity_autocorrelation.py
  63. 1
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      examples/single_dimer/tools/dimer_velocity_distribution.py
  64. 1
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      examples/single_dimer/tools/polar_density.py
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      examples/single_dimer/tools/radial_density.py
  66. 1
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      nanomotor/array.lua
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      nanomotor/box.cl
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      nanomotor/config.lua
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      nanomotor/correlation.lua
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      nanomotor/cumsum.cl
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      nanomotor/domain.lua
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      nanomotor/h5md.lua
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      nanomotor/hilbert.cl
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      nanomotor/lj.cl
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      nanomotor/rattle.lua
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      nanomotor/sort.cl
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      nanomotor/species.lua
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      nanomotor/statistics.lua
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      nanomotor/trajd.lua
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      nanomotor/trajs.lua
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      nanomotor/velocity.cl

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LICENSE View File

@@ -1,4 +1,4 @@
1
-Copyright © 2013–2016 Peter Colberg.
1
+Copyright © 2013–2017 Peter Colberg.
2 2
 
3 3
 Permission is hereby granted, free of charge, to any person obtaining a copy
4 4
 of this software and associated documentation files (the "Software"), to deal

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- 1
Makefile View File

@@ -1,6 +1,6 @@
1 1
 #
2 2
 # Makefile for nano-dimer.
3
-# Copyright © 2013–2016 Peter Colberg.
3
+# Copyright © 2013–2017 Peter Colberg.
4 4
 # Distributed under the MIT license. (See accompanying file LICENSE.)
5 5
 #
6 6
 

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- 1
doc/CHANGES.html View File

@@ -29,7 +29,7 @@
29 29
 </ul>
30 30
 </div>
31 31
 <div class="footer">
32
-&copy; Copyright 2013–2016, Peter Colberg.
32
+&copy; Copyright 2013–2017, Peter Colberg.
33 33
 Created using <a href="http://johnmacfarlane.net/pandoc/">Pandoc</a>.
34 34
 </div>
35 35
 </body>

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doc/INSTALL.html View File

@@ -149,7 +149,7 @@
149 149
 <pre><code>luarocks install --local lua-cjson</code></pre>
150 150
 </div>
151 151
 <div class="footer">
152
-&copy; Copyright 2013–2016, Peter Colberg.
152
+&copy; Copyright 2013–2017, Peter Colberg.
153 153
 Created using <a href="http://johnmacfarlane.net/pandoc/">Pandoc</a>.
154 154
 </div>
155 155
 </body>

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doc/README.html View File

@@ -89,7 +89,7 @@ cl_khr_byte_addressable_store cl_khr_icd cl_khr_gl_sharing cl_nv_compiler_option
89 89
 <p>A snapshot file is written atomically, i.e., the snapshot is guaranteed to contain a consistent state of the simulation.</p>
90 90
 </div>
91 91
 <div class="footer">
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-&copy; Copyright 2013–2016, Peter Colberg.
92
+&copy; Copyright 2013–2017, Peter Colberg.
93 93
 Created using <a href="http://johnmacfarlane.net/pandoc/">Pandoc</a>.
94 94
 </div>
95 95
 </body>

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doc/contents.mdwn View File

@@ -1,7 +1,7 @@
1 1
 ---
2 2
 title: Nano-scale chemically powered sphere-dimer motor
3 3
 author: Peter Colberg
4
-date: "2013–2016"
4
+date: "2013–2017"
5 5
 ---
6 6
 
7 7
 - [Nano-dimer](index.html)

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doc/index.html View File

@@ -45,7 +45,7 @@
45 45
 </div>
46 46
 </div>
47 47
 <div class="footer">
48
-&copy; Copyright 2013–2016, Peter Colberg.
48
+&copy; Copyright 2013–2017, Peter Colberg.
49 49
 Created using <a href="http://johnmacfarlane.net/pandoc/">Pandoc</a>.
50 50
 </div>
51 51
 </body>

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doc/pandoc.css View File

@@ -1,6 +1,6 @@
1 1
 /*
2 2
  * Stylesheet for Pandoc.
3
- * Copyright © 2013–2016 Peter Colberg.
3
+ * Copyright © 2013–2017 Peter Colberg.
4 4
  * Distributed under the MIT license. (See accompanying file LICENSE.)
5 5
  */
6 6
 

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examples/collective_dimer/benchmark/collective_dimer.lua View File

@@ -1,7 +1,7 @@
1 1
 #!/usr/bin/env luajit
2 2
 ------------------------------------------------------------------------------
3 3
 -- Measure mean time per step of collective-dimer simulation.
4
+-- Copyright © 2013–2017 Peter Colberg.
4 5
 -- Distributed under the MIT license. (See accompanying file LICENSE.)
5 6
 ------------------------------------------------------------------------------
6 7
 

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examples/collective_dimer/equilibration/collective_dimer.lua View File

@@ -1,7 +1,7 @@
1 1
 #!/usr/bin/env luajit
2 2
 ------------------------------------------------------------------------------
3 3
 -- Equilibration phase of collective-dimer simulation.
4
+-- Copyright © 2013–2017 Peter Colberg.
4 5
 -- Distributed under the MIT license. (See accompanying file LICENSE.)
5 6
 ------------------------------------------------------------------------------
6 7
 

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examples/collective_dimer/production/collective_dimer.lua View File

@@ -1,7 +1,7 @@
1 1
 #!/usr/bin/env luajit
2 2
 ------------------------------------------------------------------------------
3 3
 -- Production phase of collective-dimer simulation.
4
+-- Copyright © 2013–2017 Peter Colberg.
4 5
 -- Distributed under the MIT license. (See accompanying file LICENSE.)
5 6
 ------------------------------------------------------------------------------
6 7
 

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examples/collective_dimer/production/msdd.lua View File

@@ -1,6 +1,6 @@
1 1
 ------------------------------------------------------------------------------
2 2
 -- Mean-square displacement of dimer.
3
+-- Copyright © 2013–2017 Peter Colberg.
3 4
 -- Distributed under the MIT license. (See accompanying file LICENSE.)
4 5
 ------------------------------------------------------------------------------
5 6
 

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examples/collective_dimer/production/orient.lua View File

@@ -1,6 +1,6 @@
1 1
 ------------------------------------------------------------------------------
2 2
 -- Orientation autocorrelation of dimer.
3
+-- Copyright © 2013–2017 Peter Colberg.
3 4
 -- Distributed under the MIT license. (See accompanying file LICENSE.)
4 5
 ------------------------------------------------------------------------------
5 6
 

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examples/collective_dimer/production/vafd.lua View File

@@ -1,6 +1,6 @@
1 1
 ------------------------------------------------------------------------------
2 2
 -- Velocity autocorrelation function of dimer.
3
+-- Copyright © 2013–2017 Peter Colberg.
3 4
 -- Distributed under the MIT license. (See accompanying file LICENSE.)
4 5
 ------------------------------------------------------------------------------
5 6
 

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examples/confined_dimer/benchmark/confined_dimer.lua View File

@@ -1,7 +1,7 @@
1 1
 #!/usr/bin/env luajit
2 2
 ------------------------------------------------------------------------------
3 3
 -- Measure mean time per step of confined-dimer simulation.
4
+-- Copyright © 2013–2017 Peter Colberg.
4 5
 -- Distributed under the MIT license. (See accompanying file LICENSE.)
5 6
 ------------------------------------------------------------------------------
6 7
 

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examples/confined_dimer/equilibration/confined_dimer.lua View File

@@ -1,7 +1,7 @@
1 1
 #!/usr/bin/env luajit
2 2
 ------------------------------------------------------------------------------
3 3
 -- Equilibration phase of confined-dimer simulation.
4
+-- Copyright © 2013–2017 Peter Colberg.
4 5
 -- Distributed under the MIT license. (See accompanying file LICENSE.)
5 6
 ------------------------------------------------------------------------------
6 7
 

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examples/confined_dimer/production/cluster.lua View File

@@ -1,6 +1,6 @@
1 1
 ------------------------------------------------------------------------------
2 2
 -- Label clusters of adjacent dimers.
3
+-- Copyright © 2013–2017 Peter Colberg.
3 4
 -- Distributed under the MIT license. (See accompanying file LICENSE.)
4 5
 ------------------------------------------------------------------------------
5 6
 

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examples/confined_dimer/production/confined_dimer.lua View File

@@ -1,7 +1,7 @@
1 1
 #!/usr/bin/env luajit
2 2
 ------------------------------------------------------------------------------
3 3
 -- Production phase of confined-dimer simulation.
4
+-- Copyright © 2013–2017 Peter Colberg.
4 5
 -- Distributed under the MIT license. (See accompanying file LICENSE.)
5 6
 ------------------------------------------------------------------------------
6 7
 

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examples/confined_dimer/production/msdd.lua View File

@@ -1,6 +1,6 @@
1 1
 ------------------------------------------------------------------------------
2 2
 -- Mean-square displacement of dimer.
3
+-- Copyright © 2013–2017 Peter Colberg.
3 4
 -- Distributed under the MIT license. (See accompanying file LICENSE.)
4 5
 ------------------------------------------------------------------------------
5 6
 

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examples/confined_dimer/production/orient.lua View File

@@ -1,6 +1,6 @@
1 1
 ------------------------------------------------------------------------------
2 2
 -- Orientation autocorrelation of dimer.
3
+-- Copyright © 2013–2017 Peter Colberg.
3 4
 -- Distributed under the MIT license. (See accompanying file LICENSE.)
4 5
 ------------------------------------------------------------------------------
5 6
 

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examples/confined_dimer/production/vafd.lua View File

@@ -1,6 +1,6 @@
1 1
 ------------------------------------------------------------------------------
2 2
 -- Velocity autocorrelation function of dimer.
3
+-- Copyright © 2013–2017 Peter Colberg.
3 4
 -- Distributed under the MIT license. (See accompanying file LICENSE.)
4 5
 ------------------------------------------------------------------------------
5 6
 

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examples/confined_dimer/tools/cluster.py View File

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2 2
 # -*- coding: utf-8 -*-
3 3
 #
4 4
 # Color clusters of dimer spheres.
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-# Copyright © 2013–2016 Peter Colberg.
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+# Copyright © 2013–2017 Peter Colberg.
6 6
 # Distributed under the MIT license. (See accompanying file LICENSE.)
7 7
 #
8 8
 

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examples/confined_dimer/tools/cluster_size.py View File

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2 2
 # -*- coding: utf-8 -*-
3 3
 #
4 4
 # Plot fraction of dimers in largest cluster.
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-# Copyright © 2013–2016 Peter Colberg.
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+# Copyright © 2013–2017 Peter Colberg.
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 # Distributed under the MIT license. (See accompanying file LICENSE.)
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 #
8 8
 

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examples/confined_dimer/tools/cluster_trajectory.py View File

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2 2
 # -*- coding: utf-8 -*-
3 3
 #
4 4
 # Render trajectory of sphere-dimer clusters.
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-# Copyright © 2013–2016 Peter Colberg.
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+# Copyright © 2013–2017 Peter Colberg.
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 # Distributed under the MIT license.
7 7
 #
8 8
 

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examples/confined_dimer/tools/dimer_mean_square_displacement.py View File

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2 2
 # -*- coding: utf-8 -*-
3 3
 #
4 4
 # Plot mean-square displacement of dimer.
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-# Copyright © 2013–2016 Peter Colberg.
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+# Copyright © 2013–2017 Peter Colberg.
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 # Distributed under the MIT license. (See accompanying file LICENSE.)
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 #
8 8
 

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examples/confined_dimer/tools/dimer_orientation_autocorrelation.py View File

@@ -2,7 +2,7 @@
2 2
 # -*- coding: utf-8 -*-
3 3
 #
4 4
 # Plot orientation autocorrelation of dimer.
5
-# Copyright © 2013–2016 Peter Colberg.
5
+# Copyright © 2013–2017 Peter Colberg.
6 6
 # Distributed under the MIT license. (See accompanying file LICENSE.)
7 7
 #
8 8
 

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examples/confined_dimer/tools/dimer_trajectory.py View File

@@ -2,7 +2,7 @@
2 2
 # -*- coding: utf-8 -*-
3 3
 #
4 4
 # Render trajectory of sphere dimer.
5
-# Copyright © 2013–2016 Peter Colberg.
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+# Copyright © 2013–2017 Peter Colberg.
6 6
 # Distributed under the MIT license.
7 7
 #
8 8
 

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examples/confined_dimer/tools/dimer_velocity_autocorrelation.py View File

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2 2
 # -*- coding: utf-8 -*-
3 3
 #
4 4
 # Plot velocity autocorrelation function of dimer.
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-# Copyright © 2013–2016 Peter Colberg.
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+# Copyright © 2013–2017 Peter Colberg.
6 6
 # Distributed under the MIT license. (See accompanying file LICENSE.)
7 7
 #
8 8
 

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examples/driven_dimer/equilibration/driven_dimer.lua View File

@@ -1,7 +1,7 @@
1 1
 #!/usr/bin/env luajit
2 2
 ------------------------------------------------------------------------------
3 3
 -- Equilibration phase of driven-dimer simulation.
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+-- Copyright © 2013–2017 Peter Colberg.
4 5
 -- Distributed under the MIT license. (See accompanying file LICENSE.)
5 6
 ------------------------------------------------------------------------------
6 7
 

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examples/driven_dimer/production/cluster.lua View File

@@ -1,6 +1,6 @@
1 1
 ------------------------------------------------------------------------------
2 2
 -- Label clusters of adjacent dimers.
3
+-- Copyright © 2013–2017 Peter Colberg.
3 4
 -- Distributed under the MIT license. (See accompanying file LICENSE.)
4 5
 ------------------------------------------------------------------------------
5 6
 

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examples/driven_dimer/production/driven_dimer.lua View File

@@ -1,7 +1,7 @@
1 1
 #!/usr/bin/env luajit
2 2
 ------------------------------------------------------------------------------
3 3
 -- Production phase of driven-dimer simulation.
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+-- Copyright © 2013–2017 Peter Colberg.
4 5
 -- Distributed under the MIT license. (See accompanying file LICENSE.)
5 6
 ------------------------------------------------------------------------------
6 7
 

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examples/driven_dimer/production/msdd.lua View File

@@ -1,6 +1,6 @@
1 1
 ------------------------------------------------------------------------------
2 2
 -- Mean-square displacement of dimer.
3
+-- Copyright © 2013–2017 Peter Colberg.
3 4
 -- Distributed under the MIT license. (See accompanying file LICENSE.)
4 5
 ------------------------------------------------------------------------------
5 6
 

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examples/driven_dimer/production/orient.lua View File

@@ -1,6 +1,6 @@
1 1
 ------------------------------------------------------------------------------
2 2
 -- Orientation autocorrelation of dimer.
3
+-- Copyright © 2013–2017 Peter Colberg.
3 4
 -- Distributed under the MIT license. (See accompanying file LICENSE.)
4 5
 ------------------------------------------------------------------------------
5 6
 

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examples/driven_dimer/production/vafd.lua View File

@@ -1,6 +1,6 @@
1 1
 ------------------------------------------------------------------------------
2 2
 -- Velocity autocorrelation function of dimer.
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+-- Copyright © 2013–2017 Peter Colberg.
3 4
 -- Distributed under the MIT license. (See accompanying file LICENSE.)
4 5
 ------------------------------------------------------------------------------
5 6
 

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examples/many_dimer/benchmark/many_dimer.lua View File

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1 1
 #!/usr/bin/env luajit
2 2
 ------------------------------------------------------------------------------
3 3
 -- Measure mean time per step of many-dimer simulation.
4
+-- Copyright © 2013–2017 Peter Colberg.
4 5
 -- Distributed under the MIT license. (See accompanying file LICENSE.)
5 6
 ------------------------------------------------------------------------------
6 7
 

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1 1
 #!/usr/bin/env luajit
2 2
 ------------------------------------------------------------------------------
3 3
 -- Equilibration phase of many-dimer simulation.
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+-- Copyright © 2013–2017 Peter Colberg.
4 5
 -- Distributed under the MIT license. (See accompanying file LICENSE.)
5 6
 ------------------------------------------------------------------------------
6 7
 

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examples/many_dimer/production/many_dimer.lua View File

@@ -1,7 +1,7 @@
1 1
 #!/usr/bin/env luajit
2 2
 ------------------------------------------------------------------------------
3 3
 -- Production phase of many-dimer simulation.
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+-- Copyright © 2013–2017 Peter Colberg.
4 5
 -- Distributed under the MIT license. (See accompanying file LICENSE.)
5 6
 ------------------------------------------------------------------------------
6 7
 

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examples/many_dimer/production/msdd.lua View File

@@ -1,6 +1,6 @@
1 1
 ------------------------------------------------------------------------------
2 2
 -- Mean-square displacement of dimer.
3
+-- Copyright © 2013–2017 Peter Colberg.
3 4
 -- Distributed under the MIT license. (See accompanying file LICENSE.)
4 5
 ------------------------------------------------------------------------------
5 6
 

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examples/many_dimer/production/orient.lua View File

@@ -1,6 +1,6 @@
1 1
 ------------------------------------------------------------------------------
2 2
 -- Orientation autocorrelation of dimer.
3
+-- Copyright © 2013–2017 Peter Colberg.
3 4
 -- Distributed under the MIT license. (See accompanying file LICENSE.)
4 5
 ------------------------------------------------------------------------------
5 6
 

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examples/many_dimer/production/vafd.lua View File

@@ -1,6 +1,6 @@
1 1
 ------------------------------------------------------------------------------
2 2
 -- Velocity autocorrelation function of dimer.
3
+-- Copyright © 2013–2017 Peter Colberg.
3 4
 -- Distributed under the MIT license. (See accompanying file LICENSE.)
4 5
 ------------------------------------------------------------------------------
5 6
 

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examples/single_dimer/equilibration/single_dimer.lua View File

@@ -1,7 +1,7 @@
1 1
 #!/usr/bin/env luajit
2 2
 ------------------------------------------------------------------------------
3 3
 -- Equilibration phase of single-dimer simulation.
4
+-- Copyright © 2013–2017 Peter Colberg.
4 5
 -- Distributed under the MIT license. (See accompanying file LICENSE.)
5 6
 ------------------------------------------------------------------------------
6 7
 

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examples/single_dimer/production/cylindf.cl View File

@@ -1,6 +1,6 @@
1 1
 /*
2 2
  * Cylindrical density function.
3
- * Copyright © 2013–2016 Peter Colberg.
3
+ * Copyright © 2013–2017 Peter Colberg.
4 4
  * Distributed under the MIT license. (See accompanying file LICENSE.)
5 5
  */
6 6
 

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examples/single_dimer/production/cylindf.lua View File

@@ -1,6 +1,6 @@
1 1
 ------------------------------------------------------------------------------
2 2
 -- Cylindrical density function.
3
+-- Copyright © 2013–2017 Peter Colberg.
3 4
 -- Distributed under the MIT license. (See accompanying file LICENSE.)
4 5
 ------------------------------------------------------------------------------
5 6
 

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examples/single_dimer/production/cylinvf.cl View File

@@ -1,6 +1,6 @@
1 1
 /*
2 2
  * Cylindrical velocity field.
3
- * Copyright © 2013–2016 Peter Colberg.
3
+ * Copyright © 2013–2017 Peter Colberg.
4 4
  * Distributed under the MIT license. (See accompanying file LICENSE.)
5 5
  */
6 6
 

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- 0
examples/single_dimer/production/cylinvf.lua View File

@@ -1,6 +1,6 @@
1 1
 ------------------------------------------------------------------------------
2 2
 -- Cylindrical velocity field.
3
+-- Copyright © 2013–2017 Peter Colberg.
3 4
 -- Distributed under the MIT license. (See accompanying file LICENSE.)
4 5
 ------------------------------------------------------------------------------
5 6
 

+ 1
- 0
examples/single_dimer/production/msdd.lua View File

@@ -1,6 +1,6 @@
1 1
 ------------------------------------------------------------------------------
2 2
 -- Mean-square displacement of dimer.
3
+-- Copyright © 2013–2017 Peter Colberg.
3 4
 -- Distributed under the MIT license. (See accompanying file LICENSE.)
4 5
 ------------------------------------------------------------------------------
5 6
 

+ 1
- 0
examples/single_dimer/production/orient.lua View File

@@ -1,6 +1,6 @@
1 1
 ------------------------------------------------------------------------------
2 2
 -- Orientation autocorrelation of dimer.
3
+-- Copyright © 2013–2017 Peter Colberg.
3 4
 -- Distributed under the MIT license. (See accompanying file LICENSE.)
4 5
 ------------------------------------------------------------------------------
5 6
 

+ 1
- 1
examples/single_dimer/production/polardf.cl View File

@@ -1,6 +1,6 @@
1 1
 /*
2 2
  * Polar density function.
3
- * Copyright © 2013–2016 Peter Colberg.
3
+ * Copyright © 2013–2017 Peter Colberg.
4 4
  * Distributed under the MIT license. (See accompanying file LICENSE.)
5 5
  */
6 6
 

+ 1
- 0
examples/single_dimer/production/polardf.lua View File

@@ -1,6 +1,6 @@
1 1
 ------------------------------------------------------------------------------
2 2
 -- Polar density function.
3
+-- Copyright © 2013–2017 Peter Colberg.
3 4
 -- Distributed under the MIT license. (See accompanying file LICENSE.)
4 5
 ------------------------------------------------------------------------------
5 6
 

+ 1
- 1
examples/single_dimer/production/rdf.cl View File

@@ -1,6 +1,6 @@
1 1
 /*
2 2
  * Radial density function.
3
- * Copyright © 2013–2016 Peter Colberg.
3
+ * Copyright © 2013–2017 Peter Colberg.
4 4
  * Distributed under the MIT license. (See accompanying file LICENSE.)
5 5
  */
6 6
 

+ 1
- 0
examples/single_dimer/production/rdf.lua View File

@@ -1,6 +1,6 @@
1 1
 ------------------------------------------------------------------------------
2 2
 -- Radial density function.
3
+-- Copyright © 2013–2017 Peter Colberg.
3 4
 -- Distributed under the MIT license. (See accompanying file LICENSE.)
4 5
 ------------------------------------------------------------------------------
5 6
 

+ 1
- 0
examples/single_dimer/production/single_dimer.lua View File

@@ -1,7 +1,7 @@
1 1
 #!/usr/bin/env luajit
2 2
 ------------------------------------------------------------------------------
3 3
 -- Production phase of single-dimer simulation.
4
+-- Copyright © 2013–2017 Peter Colberg.
4 5
 -- Distributed under the MIT license. (See accompanying file LICENSE.)
5 6
 ------------------------------------------------------------------------------
6 7
 

+ 1
- 0
examples/single_dimer/production/vafd.lua View File

@@ -1,6 +1,6 @@
1 1
 ------------------------------------------------------------------------------
2 2
 -- Velocity autocorrelation function of dimer.
3
+-- Copyright © 2013–2017 Peter Colberg.
3 4
 -- Distributed under the MIT license. (See accompanying file LICENSE.)
4 5
 ------------------------------------------------------------------------------
5 6
 

+ 1
- 1
examples/single_dimer/tools/cylindrical_density.py View File

@@ -2,7 +2,7 @@
2 2
 # -*- coding: utf-8 -*-
3 3
 #
4 4
 # Plot cylindrical density function.
5
-# Copyright © 2013–2016 Peter Colberg.
5
+# Copyright © 2013–2017 Peter Colberg.
6 6
 # Distributed under the MIT license. (See accompanying file LICENSE.)
7 7
 #
8 8
 

+ 1
- 1
examples/single_dimer/tools/cylindrical_velocity.py View File

@@ -2,7 +2,7 @@
2 2
 # -*- coding: utf-8 -*-
3 3
 #
4 4
 # Plot cylindrical velocity field.
5
-# Copyright © 2013–2016 Peter Colberg.
5
+# Copyright © 2013–2017 Peter Colberg.
6 6
 # Distributed under the MIT license. (See accompanying file LICENSE.)
7 7
 #
8 8
 

+ 1
- 1
examples/single_dimer/tools/dimer_force.py View File

@@ -2,7 +2,7 @@
2 2
 # -*- coding: utf-8 -*-
3 3
 #
4 4
 # Plot dimer force projected onto dimer axis.
5
-# Copyright © 2013–2016 Peter Colberg.
5
+# Copyright © 2013–2017 Peter Colberg.
6 6
 # Distributed under the MIT license. (See accompanying file LICENSE.)
7 7
 #
8 8
 

+ 1
- 1
examples/single_dimer/tools/dimer_force_distribution.py View File

@@ -2,7 +2,7 @@
2 2
 # -*- coding: utf-8 -*-
3 3
 #
4 4
 # Plot probability density of dimer force projected onto dimer axis.
5
-# Copyright © 2013–2016 Peter Colberg.
5
+# Copyright © 2013–2017 Peter Colberg.
6 6
 # Distributed under the MIT license. (See accompanying file LICENSE.)
7 7
 #
8 8
 

+ 1
- 1
examples/single_dimer/tools/dimer_mean_square_displacement.py View File

@@ -2,7 +2,7 @@
2 2
 # -*- coding: utf-8 -*-
3 3
 #
4 4
 # Plot mean-square displacement of dimer.
5
-# Copyright © 2013–2016 Peter Colberg.
5
+# Copyright © 2013–2017 Peter Colberg.
6 6
 # Distributed under the MIT license. (See accompanying file LICENSE.)
7 7
 #
8 8
 

+ 1
- 1
examples/single_dimer/tools/dimer_orientation_autocorrelation.py View File

@@ -2,7 +2,7 @@
2 2
 # -*- coding: utf-8 -*-
3 3
 #
4 4
 # Plot orientation autocorrelation of dimer.
5
-# Copyright © 2013–2016 Peter Colberg.
5
+# Copyright © 2013–2017 Peter Colberg.
6 6
 # Distributed under the MIT license. (See accompanying file LICENSE.)
7 7
 #
8 8
 

+ 1
- 1
examples/single_dimer/tools/dimer_trajectory.py View File

@@ -2,7 +2,7 @@
2 2
 # -*- coding: utf-8 -*-
3 3
 #
4 4
 # Render trajectory of sphere dimer.
5
-# Copyright © 2013–2016 Peter Colberg.
5
+# Copyright © 2013–2017 Peter Colberg.
6 6
 # Distributed under the MIT license.
7 7
 #
8 8
 

+ 1
- 1
examples/single_dimer/tools/dimer_velocity.py View File

@@ -2,7 +2,7 @@
2 2
 # -*- coding: utf-8 -*-
3 3
 #
4 4
 # Plot dimer velocity projected onto dimer axis.
5
-# Copyright © 2013–2016 Peter Colberg.
5
+# Copyright © 2013–2017 Peter Colberg.
6 6
 # Distributed under the MIT license. (See accompanying file LICENSE.)
7 7
 #
8 8
 

+ 1
- 1
examples/single_dimer/tools/dimer_velocity_autocorrelation.py View File

@@ -2,7 +2,7 @@
2 2
 # -*- coding: utf-8 -*-
3 3
 #
4 4
 # Plot velocity autocorrelation function of dimer.
5
-# Copyright © 2013–2016 Peter Colberg.
5
+# Copyright © 2013–2017 Peter Colberg.
6 6
 # Distributed under the MIT license. (See accompanying file LICENSE.)
7 7
 #
8 8
 

+ 1
- 1
examples/single_dimer/tools/dimer_velocity_distribution.py View File

@@ -2,7 +2,7 @@
2 2
 # -*- coding: utf-8 -*-
3 3
 #
4 4
 # Plot probability density of dimer velocity projected onto dimer axis.
5
-# Copyright © 2013–2016 Peter Colberg.
5
+# Copyright © 2013–2017 Peter Colberg.
6 6
 # Distributed under the MIT license. (See accompanying file LICENSE.)
7 7
 #
8 8
 

+ 1
- 1
examples/single_dimer/tools/polar_density.py View File

@@ -2,7 +2,7 @@
2 2
 # -*- coding: utf-8 -*-
3 3
 #
4 4
 # Plot polar density function.
5
-# Copyright © 2013–2016 Peter Colberg.
5
+# Copyright © 2013–2017 Peter Colberg.
6 6
 # Distributed under the MIT license. (See accompanying file LICENSE.)
7 7
 #
8 8
 

+ 1
- 1
examples/single_dimer/tools/radial_density.py View File

@@ -2,7 +2,7 @@
2 2
 # -*- coding: utf-8 -*-
3 3
 #
4 4
 # Plot radial density function.
5
-# Copyright © 2013–2016 Peter Colberg.
5
+# Copyright © 2013–2017 Peter Colberg.
6 6
 # Distributed under the MIT license. (See accompanying file LICENSE.)
7 7
 #
8 8
 

+ 1
- 0
nanomotor/array.lua View File

@@ -1,6 +1,6 @@
1 1
 ------------------------------------------------------------------------------
2 2
 -- Allocate large-size C array.
3
+-- Copyright © 2013–2017 Peter Colberg.
3 4
 -- Distributed under the MIT license. (See accompanying file LICENSE.)
4 5
 ------------------------------------------------------------------------------
5 6
 

+ 1
- 1
nanomotor/box.cl View File

@@ -1,6 +1,6 @@
1 1
 /*
2 2
  * Boundary conditions.
3
- * Copyright © 2013–2016 Peter Colberg.
3
+ * Copyright © 2013–2017 Peter Colberg.
4 4
  * Distributed under the MIT license. (See accompanying file LICENSE.)
5 5
  */
6 6
 

+ 1
- 0
nanomotor/box.lua View File

@@ -1,6 +1,6 @@
1 1
 ------------------------------------------------------------------------------
2 2
 -- Boundary conditions.
3
+-- Copyright © 2013–2017 Peter Colberg.
3 4
 -- Distributed under the MIT license. (See accompanying file LICENSE.)
4 5
 ------------------------------------------------------------------------------
5 6
 

+ 1
- 0
nanomotor/compute.lua View File

@@ -1,6 +1,6 @@
1 1
 ------------------------------------------------------------------------------
2 2
 -- Load and build OpenCL programs.
3
+-- Copyright © 2013–2017 Peter Colberg.
3 4
 -- For conditions of distribution and use, see copyright notice in LICENSE.
4 5
 ------------------------------------------------------------------------------
5 6
 

+ 1
- 0
nanomotor/config.lua View File

@@ -1,6 +1,6 @@
1 1
 ------------------------------------------------------------------------------
2 2
 -- Load Lua config file.
3
+-- Copyright © 2013–2017 Peter Colberg.
3 4
 -- Distributed under the MIT license. (See accompanying file LICENSE.)
4 5
 ------------------------------------------------------------------------------
5 6
 

+ 1
- 0
nanomotor/correlation.lua View File

@@ -1,6 +1,6 @@
1 1
 ------------------------------------------------------------------------------
2 2
 -- Time correlation function.
3
+-- Copyright © 2013–2017 Peter Colberg.
3 4
 -- Distributed under the MIT license. (See accompanying file LICENSE.)
4 5
 ------------------------------------------------------------------------------
5 6
 

+ 1
- 1
nanomotor/cumsum.cl View File

@@ -1,6 +1,6 @@
1 1
 /*
2 2
  * Cumulative sum.
3
- * Copyright © 2013–2016 Peter Colberg.
3
+ * Copyright © 2013–2017 Peter Colberg.
4 4
  * Distributed under the MIT license. (See accompanying file LICENSE.)
5 5
  */
6 6
 

+ 1
- 0
nanomotor/cumsum.lua View File

@@ -1,6 +1,6 @@
1 1
 ------------------------------------------------------------------------------
2 2
 -- Cumulative sum.
3
+-- Copyright © 2013–2017 Peter Colberg.
3 4
 -- Distributed under the MIT license. (See accompanying file LICENSE.)
4 5
 ------------------------------------------------------------------------------
5 6
 

+ 1
- 0
nanomotor/domain.lua View File

@@ -1,6 +1,6 @@
1 1
 ------------------------------------------------------------------------------
2 2
 -- Simulation domain.
3
+-- Copyright © 2013–2017 Peter Colberg.
3 4
 -- Distributed under the MIT license. (See accompanying file LICENSE.)
4 5
 ------------------------------------------------------------------------------
5 6
 

+ 1
- 0
nanomotor/h5md.lua View File

@@ -1,6 +1,6 @@
1 1
 ------------------------------------------------------------------------------
2 2
 -- Read and write H5MD files.
3
+-- Copyright © 2013–2017 Peter Colberg.
3 4
 -- Distributed under the MIT license. (See accompanying file LICENSE.)
4 5
 ------------------------------------------------------------------------------
5 6
 

+ 1
- 1
nanomotor/hilbert.cl View File

@@ -1,6 +1,6 @@
1 1
 /*
2 2
  * Hilbert space-filling curve for domain with unequal side lengths.
3
- * Copyright © 2013–2016 Peter Colberg.
3
+ * Copyright © 2013–2017 Peter Colberg.
4 4
  * Distributed under the MIT license. (See accompanying file LICENSE.)
5 5
  */
6 6
 

+ 1
- 1
nanomotor/lj.cl View File

@@ -1,6 +1,6 @@
1 1
 /*
2 2
  * Lennard-Jones potential for dimer-solvent and dimer-dimer interactions.
3
- * Copyright © 2013–2016 Peter Colberg.
3
+ * Copyright © 2013–2017 Peter Colberg.
4 4
  * Distributed under the MIT license. (See accompanying file LICENSE.)
5 5
  */
6 6
 

+ 1
- 0
nanomotor/lj.lua View File

@@ -1,6 +1,6 @@
1 1
 ------------------------------------------------------------------------------
2 2
 -- Lennard-Jones potential for dimer-solvent and dimer-dimer interactions.
3
+-- Copyright © 2013–2017 Peter Colberg.
3 4
 -- Distributed under the MIT license. (See accompanying file LICENSE.)
4 5
 ------------------------------------------------------------------------------
5 6
 

+ 1
- 1
nanomotor/mpcd.cl View File

@@ -1,6 +1,6 @@
1 1
 /*
2 2
  * Multi-particle collision dynamics.
3
- * Copyright © 2013–2016 Peter Colberg.
3
+ * Copyright © 2013–2017 Peter Colberg.
4 4
  * Distributed under the MIT license. (See accompanying file LICENSE.)
5 5
  */
6 6
 

+ 1
- 0
nanomotor/mpcd.lua View File

@@ -1,6 +1,6 @@
1 1
 ------------------------------------------------------------------------------
2 2
 -- Multi-particle collision dynamics.
3
+-- Copyright © 2013–2017 Peter Colberg.
3 4
 -- Distributed under the MIT license. (See accompanying file LICENSE.)
4 5
 ------------------------------------------------------------------------------
5 6
 

+ 1
- 1
nanomotor/neigh.cl View File

@@ -1,6 +1,6 @@
1 1
 /*
2 2
  * Verlet neighbour lists for dimer-solvent interaction.
3
- * Copyright © 2013–2016 Peter Colberg.
3
+ * Copyright © 2013–2017 Peter Colberg.
4 4
  * Distributed under the MIT license. (See accompanying file LICENSE.)
5 5
  */
6 6
 

+ 1
- 0
nanomotor/neigh.lua View File

@@ -1,6 +1,6 @@
1 1
 ------------------------------------------------------------------------------
2 2
 -- Verlet neighbour lists for dimer-solvent interaction.
3
+-- Copyright © 2013–2017 Peter Colberg.
3 4
 -- Distributed under the MIT license. (See accompanying file LICENSE.)
4 5
 ------------------------------------------------------------------------------
5 6
 

+ 1
- 0
nanomotor/observe.lua View File

@@ -1,6 +1,6 @@
1 1
 ------------------------------------------------------------------------------
2 2
 -- Observe observables.
3
+-- Copyright © 2013–2017 Peter Colberg.
3 4
 -- Distributed under the MIT license. (See accompanying file LICENSE.)
4 5
 ------------------------------------------------------------------------------
5 6
 

+ 1
- 1
nanomotor/position.cl View File

@@ -1,6 +1,6 @@
1 1
 /*
2 2
  * Initialise solvent positions.
3
- * Copyright © 2013–2016 Peter Colberg.
3
+ * Copyright © 2013–2017 Peter Colberg.
4 4
  * Distributed under the MIT license. (See accompanying file LICENSE.)
5 5
  */
6 6
 

+ 1
- 0
nanomotor/position.lua View File

@@ -1,6 +1,6 @@
1 1
 ------------------------------------------------------------------------------
2 2
 -- Initialise solvent positions.
3
+-- Copyright © 2013–2017 Peter Colberg.
3 4
 -- Distributed under the MIT license. (See accompanying file LICENSE.)
4 5
 ------------------------------------------------------------------------------
5 6
 

+ 1
- 1
nanomotor/properties.cl View File

@@ -1,6 +1,6 @@
1 1
 /*
2 2
  * Thermodynamic properties.
3
- * Copyright © 2013–2016 Peter Colberg.
3
+ * Copyright © 2013–2017 Peter Colberg.
4 4
  * Distributed under the MIT license. (See accompanying file LICENSE.)
5 5
  */
6 6
 

+ 1
- 0
nanomotor/properties.lua View File

@@ -1,6 +1,6 @@
1 1
 ------------------------------------------------------------------------------
2 2
 -- Thermodynamic properties.
3
+-- Copyright © 2013–2017 Peter Colberg.
3 4
 -- Distributed under the MIT license. (See accompanying file LICENSE.)
4 5
 ------------------------------------------------------------------------------
5 6
 

+ 1
- 1
nanomotor/random.cl View File

@@ -1,6 +1,6 @@
1 1
 /*
2 2
  * Random distributions.
3
- * Copyright © 2013–2016 Peter Colberg.
3
+ * Copyright © 2013–2017 Peter Colberg.
4 4
  * Distributed under the MIT license. (See accompanying file LICENSE.)
5 5
  */
6 6
 

+ 1
- 0
nanomotor/random.lua View File

@@ -1,6 +1,6 @@
1 1
 ------------------------------------------------------------------------------
2 2
 -- Random distributions.
3
+-- Copyright © 2013–2017 Peter Colberg.
3 4
 -- Distributed under the MIT license. (See accompanying file LICENSE.)
4 5
 ------------------------------------------------------------------------------
5 6
 

+ 1
- 0
nanomotor/rattle.lua View File

@@ -1,6 +1,6 @@
1 1
 ------------------------------------------------------------------------------
2 2
 -- RATTLE algorithm for dimer spheres.
3
+-- Copyright © 2013–2017 Peter Colberg.
3 4
 -- Distributed under the MIT license. (See accompanying file LICENSE.)
4 5
 ------------------------------------------------------------------------------
5 6
 

+ 1
- 0
nanomotor/snapshot.lua View File

@@ -1,6 +1,6 @@
1 1
 ------------------------------------------------------------------------------
2 2
 -- Snapshot program state.
3
+-- Copyright © 2013–2017 Peter Colberg.
3 4
 -- Distributed under the MIT license. (See accompanying file LICENSE.)
4 5
 ------------------------------------------------------------------------------
5 6
 

+ 1
- 1
nanomotor/sort.cl View File

@@ -1,6 +1,6 @@
1 1
 /*
2 2
  * Solvent particle sort.
3
- * Copyright © 2013–2016 Peter Colberg.
3
+ * Copyright © 2013–2017 Peter Colberg.
4 4
  * Distributed under the MIT license. (See accompanying file LICENSE.)
5 5
  */
6 6
 

+ 1
- 0
nanomotor/sort.lua View File

@@ -1,6 +1,6 @@
1 1
 ------------------------------------------------------------------------------
2 2
 -- Solvent particle sort.
3
+-- Copyright © 2013–2017 Peter Colberg.
3 4
 -- Distributed under the MIT license. (See accompanying file LICENSE.)
4 5
 ------------------------------------------------------------------------------
5 6
 

+ 1
- 1
nanomotor/species.cl View File

@@ -1,6 +1,6 @@
1 1
 /*
2 2
  * Count solvent species.
3
- * Copyright © 2013–2016 Peter Colberg.
3
+ * Copyright © 2013–2017 Peter Colberg.
4 4
  * Distributed under the MIT license. (See accompanying file LICENSE.)
5 5
  */
6 6
 

+ 1
- 0
nanomotor/species.lua View File

@@ -1,6 +1,6 @@
1 1
 ------------------------------------------------------------------------------
2 2
 -- Count solvent species.
3
+-- Copyright © 2013–2017 Peter Colberg.
3 4
 -- Distributed under the MIT license. (See accompanying file LICENSE.)
4 5
 ------------------------------------------------------------------------------
5 6
 

+ 1
- 0
nanomotor/statistics.lua View File

@@ -1,6 +1,6 @@
1 1
 ------------------------------------------------------------------------------
2 2
 -- Statistical moments.
3
+-- Copyright © 2013–2017 Peter Colberg.
3 4
 -- Distributed under the MIT license. (See accompanying file LICENSE.)
4 5
 ------------------------------------------------------------------------------
5 6
 

+ 1
- 0
nanomotor/thermo.lua View File

@@ -1,6 +1,6 @@
1 1
 ------------------------------------------------------------------------------
2 2
 -- Write thermodynamic properties.
3
+-- Copyright © 2013–2017 Peter Colberg.
3 4
 -- Distributed under the MIT license. (See accompanying file LICENSE.)
4 5
 ------------------------------------------------------------------------------
5 6
 

+ 1
- 0
nanomotor/trajd.lua View File

@@ -1,6 +1,6 @@
1 1
 ------------------------------------------------------------------------------
2 2
 -- Write dimer trajectory.
3
+-- Copyright © 2013–2017 Peter Colberg.
3 4
 -- Distributed under the MIT license. (See accompanying file LICENSE.)
4 5
 ------------------------------------------------------------------------------
5 6
 

+ 1
- 0
nanomotor/trajs.lua View File

@@ -1,6 +1,6 @@
1 1
 ------------------------------------------------------------------------------
2 2
 -- Write solvent trajectory.
3
+-- Copyright © 2013–2017 Peter Colberg.
3 4
 -- Distributed under the MIT license. (See accompanying file LICENSE.)
4 5
 ------------------------------------------------------------------------------
5 6
 

+ 0
- 0
nanomotor/velocity.cl View File


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